Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Grk6-207ENSMUST00000225925 2769 ntBASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Gm7222-201ENSMUST00000117512 906 ntBASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Gm25911-201ENSMUST00000157621 56 ntBASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Gm26308-201ENSMUST00000157768 69 ntBASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC17.07■□□□□ 0.32
Ushbp1Q8R370 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Gm7556-201ENSMUST00000201178 1084 ntBASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Gm5049-201ENSMUST00000195878 1590 ntBASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Ushbp1Q8R370 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 AC151286.1-201ENSMUST00000198489 145 ntBASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ushbp1Q8R370 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Gm5648-201ENSMUST00000122244 1587 ntBASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 AC122024.2-201ENSMUST00000220086 871 ntBASIC17.04■□□□□ 0.32
Ushbp1Q8R370 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms