Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Gm8242-201ENSMUST00000193029 1420 ntBASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Brf1Q8CFK2 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Brf1Q8CFK2 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Brf1Q8CFK2 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Brf1Q8CFK2 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Gm42670-201ENSMUST00000201816 1292 ntBASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Brf1Q8CFK2 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Brf1Q8CFK2 AC084391.1-201ENSMUST00000200651 141 ntBASIC18.36■□□□□ 0.53
Brf1Q8CFK2 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms