Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC20.83■□□□□ 0.93
Usp40Q8BWR4 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Usp40Q8BWR4 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Usp40Q8BWR4 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp40Q8BWR4 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.93
Usp40Q8BWR4 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp40Q8BWR4 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp40Q8BWR4 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Usp40Q8BWR4 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp40Q8BWR4 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC20.83■□□□□ 0.92
Usp40Q8BWR4 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC20.83■□□□□ 0.92
Usp40Q8BWR4 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC20.83■□□□□ 0.92
Usp40Q8BWR4 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Usp40Q8BWR4 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 AC131743.5-201ENSMUST00000220775 1618 ntBASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Gm13233-201ENSMUST00000118760 1443 ntBASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Gm13244-201ENSMUST00000118855 1446 ntBASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Prob1-201ENSMUST00000097619 3021 ntBASIC20.82■□□□□ 0.92
Usp40Q8BWR4 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp40Q8BWR4 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 AC093043.3-201ENSMUST00000226531 2273 ntBASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Gm8242-201ENSMUST00000193029 1420 ntBASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Gm27430-201ENSMUST00000184585 107 ntBASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Mir7023-201ENSMUST00000185093 64 ntBASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Gm37277-201ENSMUST00000194052 1111 ntBASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Gm44333-201ENSMUST00000197168 107 ntBASIC20.81■□□□□ 0.92
Usp40Q8BWR4 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp40Q8BWR4 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Ccdc166-201ENSMUST00000182172 2584 ntBASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Gm15693-201ENSMUST00000120470 637 ntBASIC20.8■□□□□ 0.92
Usp40Q8BWR4 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp40Q8BWR4 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Gm18737-201ENSMUST00000173594 937 ntBASIC20.79■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms