Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm25406-201ENSMUST00000157599 105 ntBASIC14.22□□□□□ -0.13
ShhQ62226 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
ShhQ62226 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC14.22□□□□□ -0.13
ShhQ62226 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
ShhQ62226 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
ShhQ62226 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.22□□□□□ -0.13
ShhQ62226 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
ShhQ62226 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
ShhQ62226 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
ShhQ62226 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
ShhQ62226 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
ShhQ62226 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC14.21□□□□□ -0.13
ShhQ62226 Gm5253-201ENSMUST00000187104 1025 ntBASIC14.21□□□□□ -0.13
ShhQ62226 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
ShhQ62226 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ShhQ62226 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC14.21□□□□□ -0.14
ShhQ62226 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ShhQ62226 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ShhQ62226 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ShhQ62226 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ShhQ62226 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ShhQ62226 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ShhQ62226 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ShhQ62226 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ShhQ62226 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Gm37812-201ENSMUST00000195216 2475 ntBASIC14.2□□□□□ -0.14
ShhQ62226 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
ShhQ62226 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
ShhQ62226 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
ShhQ62226 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
ShhQ62226 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC14.2□□□□□ -0.14
ShhQ62226 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.2□□□□□ -0.14
ShhQ62226 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
ShhQ62226 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.2□□□□□ -0.14
ShhQ62226 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
ShhQ62226 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
ShhQ62226 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
ShhQ62226 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ShhQ62226 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
ShhQ62226 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC14.19□□□□□ -0.14
ShhQ62226 Gm6257-201ENSMUST00000163864 910 ntBASIC14.19□□□□□ -0.14
ShhQ62226 AA543401-201ENSMUST00000164248 1269 ntBASIC14.19□□□□□ -0.14
ShhQ62226 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC14.19□□□□□ -0.14
ShhQ62226 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
ShhQ62226 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
ShhQ62226 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms