Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim40Q3UWA4 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim40Q3UWA4 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim40Q3UWA4 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Trim40Q3UWA4 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim40Q3UWA4 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Gm14780-201ENSMUST00000118387 2737 ntBASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Prkcz2-201ENSMUST00000206136 1756 ntBASIC14.32□□□□□ -0.12
Trim40Q3UWA4 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Gm7889-201ENSMUST00000185591 958 ntBASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim40Q3UWA4 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Trim40Q3UWA4 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms