Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Gm13036-201ENSMUST00000117799 748 ntBASIC17.94■□□□□ 0.46
Limch1Q3UH68 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Gm27628-201ENSMUST00000184911 107 ntBASIC17.94■□□□□ 0.46
Limch1Q3UH68 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC17.94■□□□□ 0.46
Limch1Q3UH68 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.94■□□□□ 0.46
Limch1Q3UH68 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.94■□□□□ 0.46
Limch1Q3UH68 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Limch1Q3UH68 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Gm14494-201ENSMUST00000118786 435 ntBASIC17.92■□□□□ 0.46
Limch1Q3UH68 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Limch1Q3UH68 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Gm2756-201ENSMUST00000195851 400 ntBASIC17.92■□□□□ 0.46
Limch1Q3UH68 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Limch1Q3UH68 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Gm7222-201ENSMUST00000117512 906 ntBASIC17.91■□□□□ 0.46
Limch1Q3UH68 Gm15358-201ENSMUST00000119249 520 ntBASIC17.91■□□□□ 0.46
Limch1Q3UH68 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC17.91■□□□□ 0.46
Limch1Q3UH68 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Gm9727-201ENSMUST00000161387 555 ntBASIC17.91■□□□□ 0.46
Limch1Q3UH68 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Gm43575-201ENSMUST00000196420 516 ntBASIC17.91■□□□□ 0.46
Limch1Q3UH68 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.91■□□□□ 0.46
Limch1Q3UH68 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.91■□□□□ 0.46
Limch1Q3UH68 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms