Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Rfx1P48377 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rfx1P48377 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rfx1P48377 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rfx1P48377 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC18.24■□□□□ 0.51
Rfx1P48377 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.24■□□□□ 0.51
Rfx1P48377 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC18.24■□□□□ 0.51
Rfx1P48377 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rfx1P48377 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rfx1P48377 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rfx1P48377 Gm37912-201ENSMUST00000191895 3076 ntBASIC18.24■□□□□ 0.51
Rfx1P48377 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rfx1P48377 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rfx1P48377 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rfx1P48377 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rfx1P48377 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Rfx1P48377 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Rfx1P48377 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Gm9013-201ENSMUST00000132939 882 ntBASIC18.23■□□□□ 0.51
Rfx1P48377 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Rfx1P48377 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC18.23■□□□□ 0.51
Rfx1P48377 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.23■□□□□ 0.51
Rfx1P48377 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rfx1P48377 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Rfx1P48377 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Rfx1P48377 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Rfx1P48377 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Rfx1P48377 Gm4609-201ENSMUST00000106443 1002 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm5138-201ENSMUST00000113842 1002 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm15191-201ENSMUST00000117933 1000 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm12182-201ENSMUST00000118655 1008 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm13882-201ENSMUST00000120886 1002 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC18.22■□□□□ 0.51
Rfx1P48377 Gm10284-201ENSMUST00000145057 1005 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm10481-201ENSMUST00000179228 1002 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm2574-201ENSMUST00000181051 1002 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm3200-201ENSMUST00000181493 1002 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm8825-201ENSMUST00000182565 998 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm4518-201ENSMUST00000182638 718 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm8330-201ENSMUST00000182754 1008 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm4575-201ENSMUST00000182991 1002 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm8709-201ENSMUST00000183230 1012 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC18.22■□□□□ 0.51
Rfx1P48377 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Rfx1P48377 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Gm10293-201ENSMUST00000076317 1002 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Gm6316-201ENSMUST00000082064 1020 ntBASIC18.22■□□□□ 0.51
Rfx1P48377 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
Rfx1P48377 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rfx1P48377 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Rfx1P48377 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC18.21■□□□□ 0.51
Rfx1P48377 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
Rfx1P48377 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC18.21■□□□□ 0.51
Rfx1P48377 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC18.21■□□□□ 0.51
Rfx1P48377 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx1P48377 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms