Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC14.46□□□□□ -0.09
Msx1P13297 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC14.46□□□□□ -0.09
Msx1P13297 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Msx1P13297 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Klra4-201ENSMUST00000119096 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Mir6956-201ENSMUST00000183598 62 ntBASIC14.46□□□□□ -0.09
Msx1P13297 Gm37171-201ENSMUST00000192636 1185 ntBASIC14.46□□□□□ -0.09
Msx1P13297 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.46□□□□□ -0.09
Msx1P13297 Gm44136-201ENSMUST00000203819 1106 ntBASIC14.46□□□□□ -0.09
Msx1P13297 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC14.46□□□□□ -0.09
Msx1P13297 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx1P13297 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Msx1P13297 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC14.46□□□□□ -0.09
Msx1P13297 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
Msx1P13297 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msx1P13297 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msx1P13297 Gm27528-202ENSMUST00000222916 2012 ntBASIC14.46□□□□□ -0.1
Msx1P13297 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msx1P13297 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.46□□□□□ -0.1
Msx1P13297 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Msx1P13297 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Msx1P13297 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC14.45□□□□□ -0.1
Msx1P13297 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC14.45□□□□□ -0.1
Msx1P13297 AC124549.3-201ENSMUST00000225541 367 ntBASIC14.45□□□□□ -0.1
Msx1P13297 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Msx1P13297 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Msx1P13297 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx1P13297 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.44□□□□□ -0.1
Msx1P13297 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Msx1P13297 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC14.44□□□□□ -0.1
Msx1P13297 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Msx1P13297 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Msx1P13297 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx1P13297 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
Msx1P13297 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC14.43□□□□□ -0.1
Msx1P13297 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Msx1P13297 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC14.43□□□□□ -0.1
Msx1P13297 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Msx1P13297 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC14.43□□□□□ -0.1
Msx1P13297 Gm27321-201ENSMUST00000185021 205 ntBASIC14.43□□□□□ -0.1
Msx1P13297 Gm37153-201ENSMUST00000193637 231 ntBASIC14.43□□□□□ -0.1
Msx1P13297 AC139382.1-201ENSMUST00000221402 498 ntBASIC14.43□□□□□ -0.1
Msx1P13297 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms