Protein–RNA interactions for Protein: Q99LI7

Cstf3, Cleavage stimulation factor subunit 3, mousemouse

Known RBP Predictions only

Length 717 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf3Q99LI7 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cstf3Q99LI7 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cstf3Q99LI7 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cstf3Q99LI7 Gm14026-201ENSMUST00000120625 1789 ntBASIC14.8□□□□□ -0.04
Cstf3Q99LI7 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cstf3Q99LI7 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cstf3Q99LI7 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cstf3Q99LI7 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 AC154412.1-201ENSMUST00000226540 2786 ntBASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Gm29340-201ENSMUST00000188763 3854 ntBASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cstf3Q99LI7 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Gm12644-201ENSMUST00000119935 606 ntBASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.78□□□□□ -0.04
Cstf3Q99LI7 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cstf3Q99LI7 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Gm8097-201ENSMUST00000117903 829 ntBASIC14.77□□□□□ -0.05
Cstf3Q99LI7 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Gm18669-201ENSMUST00000216049 778 ntBASIC14.77□□□□□ -0.05
Cstf3Q99LI7 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Cstf3Q99LI7 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms