Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC15.41■□□□□ 0.06
Six4Q61321 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Six4Q61321 Gm13294-201ENSMUST00000121757 1330 ntBASIC15.41■□□□□ 0.06
Six4Q61321 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Gm5366-201ENSMUST00000215494 1338 ntBASIC15.41■□□□□ 0.06
Six4Q61321 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
Six4Q61321 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Six4Q61321 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Gm14140-201ENSMUST00000119999 995 ntBASIC15.4■□□□□ 0.06
Six4Q61321 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC15.4■□□□□ 0.06
Six4Q61321 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Six4Q61321 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC15.4■□□□□ 0.06
Six4Q61321 AC130669.1-201ENSMUST00000228537 1672 ntBASIC15.4■□□□□ 0.06
Six4Q61321 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Six4Q61321 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Six4Q61321 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Six4Q61321 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC15.4■□□□□ 0.06
Six4Q61321 AC154412.1-201ENSMUST00000226540 2786 ntBASIC15.4■□□□□ 0.06
Six4Q61321 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Six4Q61321 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
Six4Q61321 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC15.39■□□□□ 0.05
Six4Q61321 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC15.39■□□□□ 0.05
Six4Q61321 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC15.39■□□□□ 0.05
Six4Q61321 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Six4Q61321 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC15.38■□□□□ 0.05
Six4Q61321 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC15.38■□□□□ 0.05
Six4Q61321 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Six4Q61321 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Six4Q61321 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Six4Q61321 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC15.37■□□□□ 0.05
Six4Q61321 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Six4Q61321 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms