Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 Gm18062-201ENSMUST00000208020 547 ntBASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 Gm18055-201ENSMUST00000208254 547 ntBASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 Gm20445-201ENSMUST00000061905 565 ntBASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddb1Q3U1J4 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Mir1897-201ENSMUST00000122581 272 ntBASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Gm42612-201ENSMUST00000197986 623 ntBASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Gm43170-201ENSMUST00000199827 612 ntBASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddb1Q3U1J4 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Ddb1Q3U1J4 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ddb1Q3U1J4 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ddb1Q3U1J4 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ddb1Q3U1J4 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Gm9115-201ENSMUST00000120192 1348 ntBASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Gm22189-201ENSMUST00000103822 86 ntBASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddb1Q3U1J4 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Ldb3-207ENSMUST00000227819 1499 ntBASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Gm43703-201ENSMUST00000200523 763 ntBASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 AC164567.1-201ENSMUST00000219185 960 ntBASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ddb1Q3U1J4 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms