Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Gm44430-201ENSMUST00000203376 995 ntBASIC14.86□□□□□ -0.03
Col28a1Q2UY11 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col28a1Q2UY11 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Gm10052-201ENSMUST00000168019 960 ntBASIC14.85□□□□□ -0.03
Col28a1Q2UY11 AC164629.2-201ENSMUST00000217916 270 ntBASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Gm7729-201ENSMUST00000050143 801 ntBASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Birc2-201ENSMUST00000054878 378 ntBASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col28a1Q2UY11 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Gm45504-201ENSMUST00000211407 2107 ntBASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Gm28659-201ENSMUST00000188013 759 ntBASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Gm43514-201ENSMUST00000198852 424 ntBASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC14.84□□□□□ -0.03
Col28a1Q2UY11 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms