Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC14.01□□□□□ -0.17
Scn1bP97952 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Scn1bP97952 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Scn1bP97952 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Scn1bP97952 AC154855.1-201ENSMUST00000227353 1458 ntBASIC14□□□□□ -0.17
Scn1bP97952 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC14□□□□□ -0.17
Scn1bP97952 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC14□□□□□ -0.17
Scn1bP97952 Gm13186-201ENSMUST00000118031 316 ntBASIC14□□□□□ -0.17
Scn1bP97952 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC14□□□□□ -0.17
Scn1bP97952 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC14□□□□□ -0.17
Scn1bP97952 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Scn1bP97952 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Scn1bP97952 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
Scn1bP97952 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Gm38577-201ENSMUST00000221531 4545 ntBASIC14□□□□□ -0.17
Scn1bP97952 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14□□□□□ -0.17
Scn1bP97952 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14□□□□□ -0.17
Scn1bP97952 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn1bP97952 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Scn1bP97952 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC13.99□□□□□ -0.17
Scn1bP97952 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
Scn1bP97952 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
Scn1bP97952 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Gm4217-201ENSMUST00000182243 1002 ntBASIC13.99□□□□□ -0.17
Scn1bP97952 Gm21814-202ENSMUST00000203277 873 ntBASIC13.99□□□□□ -0.17
Scn1bP97952 Gm30025-201ENSMUST00000218555 728 ntBASIC13.99□□□□□ -0.17
Scn1bP97952 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Scn1bP97952 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Scn1bP97952 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Scn1bP97952 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn1bP97952 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
Scn1bP97952 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn1bP97952 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn1bP97952 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Scn1bP97952 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC13.98□□□□□ -0.17
Scn1bP97952 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Scn1bP97952 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn1bP97952 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Scn1bP97952 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn1bP97952 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms