Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Sox1P53783 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC15.54■□□□□ 0.08
Sox1P53783 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Gm6257-201ENSMUST00000163864 910 ntBASIC15.54■□□□□ 0.08
Sox1P53783 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
Sox1P53783 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.54■□□□□ 0.08
Sox1P53783 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC15.54■□□□□ 0.08
Sox1P53783 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC15.54■□□□□ 0.08
Sox1P53783 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
Sox1P53783 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
Sox1P53783 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Sox1P53783 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
Sox1P53783 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Gm24543-201ENSMUST00000103867 82 ntBASIC15.53■□□□□ 0.08
Sox1P53783 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC15.53■□□□□ 0.08
Sox1P53783 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC15.53■□□□□ 0.08
Sox1P53783 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Gm9002-201ENSMUST00000178437 499 ntBASIC15.53■□□□□ 0.08
Sox1P53783 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC15.53■□□□□ 0.08
Sox1P53783 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC15.53■□□□□ 0.08
Sox1P53783 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC15.53■□□□□ 0.08
Sox1P53783 CT030657.3-201ENSMUST00000222707 1200 ntBASIC15.53■□□□□ 0.08
Sox1P53783 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Sox1P53783 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Sox1P53783 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sox1P53783 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Sox1P53783 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Sox1P53783 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC15.52■□□□□ 0.08
Sox1P53783 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC15.52■□□□□ 0.08
Sox1P53783 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC15.52■□□□□ 0.08
Sox1P53783 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Gm16026-204ENSMUST00000162652 683 ntBASIC15.52■□□□□ 0.08
Sox1P53783 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sox1P53783 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.52■□□□□ 0.08
Sox1P53783 Gm43703-201ENSMUST00000200523 763 ntBASIC15.52■□□□□ 0.08
Sox1P53783 CT009713.10-202ENSMUST00000225734 696 ntBASIC15.52■□□□□ 0.08
Sox1P53783 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sox1P53783 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.52■□□□□ 0.07
Sox1P53783 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sox1P53783 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sox1P53783 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Sox1P53783 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sox1P53783 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sox1P53783 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sox1P53783 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sox1P53783 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Gm11661-201ENSMUST00000121761 1327 ntBASIC15.51■□□□□ 0.07
Sox1P53783 Gm5303-201ENSMUST00000117943 1252 ntBASIC15.51■□□□□ 0.07
Sox1P53783 Gm8062-201ENSMUST00000139696 444 ntBASIC15.51■□□□□ 0.07
Sox1P53783 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC15.51■□□□□ 0.07
Sox1P53783 Gm9522-201ENSMUST00000182394 926 ntBASIC15.51■□□□□ 0.07
Sox1P53783 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.51■□□□□ 0.07
Sox1P53783 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms