Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Cxcl12P40224 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC15.67■□□□□ 0.1
Cxcl12P40224 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC15.67■□□□□ 0.1
Cxcl12P40224 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC15.67■□□□□ 0.1
Cxcl12P40224 AC153962.4-201ENSMUST00000217878 242 ntBASIC15.67■□□□□ 0.1
Cxcl12P40224 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Gm5898-201ENSMUST00000121016 2071 ntBASIC15.67■□□□□ 0.1
Cxcl12P40224 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Gm5320-201ENSMUST00000207163 1519 ntBASIC15.67■□□□□ 0.1
Cxcl12P40224 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cxcl12P40224 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.66■□□□□ 0.1
Cxcl12P40224 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Cxcl12P40224 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Gm15824-201ENSMUST00000119516 955 ntBASIC15.66■□□□□ 0.1
Cxcl12P40224 Gm12138-201ENSMUST00000122180 951 ntBASIC15.66■□□□□ 0.1
Cxcl12P40224 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Cxcl12P40224 Klk2-ps-201ENSMUST00000205342 571 ntBASIC15.66■□□□□ 0.1
Cxcl12P40224 Gm44719-201ENSMUST00000206404 149 ntBASIC15.66■□□□□ 0.1
Cxcl12P40224 Gm9908-201ENSMUST00000211534 448 ntBASIC15.66■□□□□ 0.1
Cxcl12P40224 AC090659.2-201ENSMUST00000225378 1186 ntBASIC15.66■□□□□ 0.1
Cxcl12P40224 Gm9899-201ENSMUST00000065519 555 ntBASIC15.66■□□□□ 0.1
Cxcl12P40224 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cxcl12P40224 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Gm15653-201ENSMUST00000119247 907 ntBASIC15.65■□□□□ 0.1
Cxcl12P40224 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Mir1938-201ENSMUST00000158746 100 ntBASIC15.65■□□□□ 0.1
Cxcl12P40224 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Mir7085-201ENSMUST00000184353 66 ntBASIC15.65■□□□□ 0.1
Cxcl12P40224 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC15.65■□□□□ 0.1
Cxcl12P40224 Gm45059-201ENSMUST00000205558 1077 ntBASIC15.65■□□□□ 0.1
Cxcl12P40224 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Shd-206ENSMUST00000225145 998 ntBASIC15.65■□□□□ 0.1
Cxcl12P40224 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Gm9115-201ENSMUST00000120192 1348 ntBASIC15.65■□□□□ 0.1
Cxcl12P40224 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC15.65■□□□□ 0.1
Cxcl12P40224 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cxcl12P40224 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
Cxcl12P40224 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC15.64■□□□□ 0.09
Cxcl12P40224 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Cxcl12P40224 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 Gm5566-201ENSMUST00000116118 459 ntBASIC15.64■□□□□ 0.09
Cxcl12P40224 Gm13829-201ENSMUST00000119600 138 ntBASIC15.64■□□□□ 0.09
Cxcl12P40224 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 Gm9719-201ENSMUST00000162765 543 ntBASIC15.64■□□□□ 0.09
Cxcl12P40224 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC15.64■□□□□ 0.09
Cxcl12P40224 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC15.64■□□□□ 0.09
Cxcl12P40224 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC15.64■□□□□ 0.09
Cxcl12P40224 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 Gm20445-201ENSMUST00000061905 565 ntBASIC15.64■□□□□ 0.09
Cxcl12P40224 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC15.64■□□□□ 0.09
Cxcl12P40224 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cxcl12P40224 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms