Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Prom1O54990 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Prom1O54990 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.82■□□□□ 0.28
Prom1O54990 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
Prom1O54990 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
Prom1O54990 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC16.81■□□□□ 0.28
Prom1O54990 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC16.81■□□□□ 0.28
Prom1O54990 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC16.81■□□□□ 0.28
Prom1O54990 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
Prom1O54990 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Prom1O54990 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Prom1O54990 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Prom1O54990 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.8■□□□□ 0.28
Prom1O54990 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
Prom1O54990 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
Prom1O54990 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC16.8■□□□□ 0.28
Prom1O54990 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC16.8■□□□□ 0.28
Prom1O54990 Rbfox2-208ENSMUST00000227930 1218 ntBASIC16.8■□□□□ 0.28
Prom1O54990 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC16.8■□□□□ 0.28
Prom1O54990 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Prom1O54990 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Prom1O54990 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Prom1O54990 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Prom1O54990 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16.79■□□□□ 0.28
Prom1O54990 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Prom1O54990 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Gm25287-201ENSMUST00000103846 110 ntBASIC16.79■□□□□ 0.28
Prom1O54990 Gm22918-201ENSMUST00000103855 110 ntBASIC16.79■□□□□ 0.28
Prom1O54990 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC16.79■□□□□ 0.28
Prom1O54990 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC16.79■□□□□ 0.28
Prom1O54990 Gm16026-204ENSMUST00000162652 683 ntBASIC16.79■□□□□ 0.28
Prom1O54990 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC16.79■□□□□ 0.28
Prom1O54990 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Gm8096-201ENSMUST00000209921 1591 ntBASIC16.79■□□□□ 0.28
Prom1O54990 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.79■□□□□ 0.28
Prom1O54990 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Prom1O54990 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Prom1O54990 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC16.78■□□□□ 0.28
Prom1O54990 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC16.78■□□□□ 0.28
Prom1O54990 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC16.78■□□□□ 0.28
Prom1O54990 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Prom1O54990 Gm43548-201ENSMUST00000197139 2353 ntBASIC16.78■□□□□ 0.28
Prom1O54990 Gm12428-201ENSMUST00000119844 727 ntBASIC16.78■□□□□ 0.28
Prom1O54990 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC16.78■□□□□ 0.28
Prom1O54990 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
Prom1O54990 Gm27430-201ENSMUST00000184585 107 ntBASIC16.78■□□□□ 0.28
Prom1O54990 Gm44333-201ENSMUST00000197168 107 ntBASIC16.78■□□□□ 0.28
Prom1O54990 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.78■□□□□ 0.28
Prom1O54990 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 CT025535.1-201ENSMUST00000227172 491 ntBASIC16.78■□□□□ 0.28
Prom1O54990 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Prom1O54990 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Prom1O54990 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Prom1O54990 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms