Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a4A2AX52 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a4A2AX52 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Col6a4A2AX52 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a4A2AX52 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a4A2AX52 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC12.89□□□□□ -0.35
Col6a4A2AX52 Gm18187-201ENSMUST00000196476 984 ntBASIC12.89□□□□□ -0.35
Col6a4A2AX52 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC12.89□□□□□ -0.35
Col6a4A2AX52 AC124732.1-201ENSMUST00000221551 910 ntBASIC12.89□□□□□ -0.35
Col6a4A2AX52 CT025555.1-201ENSMUST00000225901 1217 ntBASIC12.89□□□□□ -0.35
Col6a4A2AX52 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a4A2AX52 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC12.89□□□□□ -0.35
Col6a4A2AX52 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Gm44855-201ENSMUST00000205725 362 ntBASIC12.88□□□□□ -0.35
Col6a4A2AX52 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 AC131710.1-201ENSMUST00000228336 990 ntBASIC12.88□□□□□ -0.35
Col6a4A2AX52 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC12.88□□□□□ -0.35
Col6a4A2AX52 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a4A2AX52 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 AC130669.1-201ENSMUST00000228537 1672 ntBASIC12.87□□□□□ -0.35
Col6a4A2AX52 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Haglr-201ENSMUST00000100000 2085 ntBASIC12.87□□□□□ -0.35
Col6a4A2AX52 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Gm8410-201ENSMUST00000117225 605 ntBASIC12.87□□□□□ -0.35
Col6a4A2AX52 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col6a4A2AX52 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Col6a4A2AX52 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a4A2AX52 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms