Protein–RNA interactions for Protein: A0A0G2JFX3

Trav13d-4, T cell receptor alpha variable 13D-4 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-4A0A0G2JFX3 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Gm9987-201ENSMUST00000069768 567 ntBASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Gm7669-201ENSMUST00000210184 1603 ntBASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Gm45779-201ENSMUST00000212189 4064 ntBASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Gm45133-201ENSMUST00000207548 2773 ntBASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Gm10605-202ENSMUST00000183019 3198 ntBASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.72
Trav13d-4A0A0G2JFX3 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms