Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Gm10154-201ENSMUST00000084445 354 ntBASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Gm13410-201ENSMUST00000117058 1415 ntBASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube3bQ9ES34 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 AC164567.1-201ENSMUST00000219185 960 ntBASIC18.13■□□□□ 0.49
Ube3bQ9ES34 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube3bQ9ES34 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Gm16011-201ENSMUST00000121567 2662 ntBASIC18.12■□□□□ 0.49
Ube3bQ9ES34 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Gm42901-201ENSMUST00000197735 3171 ntBASIC18.12■□□□□ 0.49
Ube3bQ9ES34 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Chchd1-203ENSMUST00000224633 557 ntBASIC18.11■□□□□ 0.49
Ube3bQ9ES34 AC124549.3-201ENSMUST00000225541 367 ntBASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ube3bQ9ES34 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ube3bQ9ES34 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ube3bQ9ES34 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ube3bQ9ES34 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ube3bQ9ES34 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.1■□□□□ 0.49
Ube3bQ9ES34 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Ube3bQ9ES34 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.1■□□□□ 0.49
Ube3bQ9ES34 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms