Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm9385-201ENSMUST00000117563 472 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm12008-201ENSMUST00000117791 755 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm15920-201ENSMUST00000118998 402 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm10499-201ENSMUST00000174094 934 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm44335-201ENSMUST00000196879 141 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm44297-201ENSMUST00000198304 141 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm44346-201ENSMUST00000198851 141 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm20553-201ENSMUST00000204205 844 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 AC139382.1-201ENSMUST00000221402 498 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Gm11745-201ENSMUST00000121669 448 ntBASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim54Q9ERP3 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Gm14722-201ENSMUST00000118943 689 ntBASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim54Q9ERP3 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms