Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Gm45293-201ENSMUST00000209754 1812 ntBASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trub1Q8C0D0 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Gm7862-201ENSMUST00000121461 292 ntBASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Gm11452-201ENSMUST00000122376 690 ntBASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trub1Q8C0D0 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Gm13034-201ENSMUST00000121342 3177 ntBASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Gm18489-201ENSMUST00000172565 551 ntBASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Gm7230-201ENSMUST00000173026 815 ntBASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trub1Q8C0D0 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Gm8242-201ENSMUST00000193029 1420 ntBASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Gm29340-201ENSMUST00000188763 3854 ntBASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Gm11453-201ENSMUST00000117318 1007 ntBASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Gm7222-201ENSMUST00000117512 906 ntBASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Gm10499-201ENSMUST00000174094 934 ntBASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Gm37153-201ENSMUST00000193637 231 ntBASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Trub1Q8C0D0 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trub1Q8C0D0 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trub1Q8C0D0 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trub1Q8C0D0 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trub1Q8C0D0 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.11
Trub1Q8C0D0 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trub1Q8C0D0 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trub1Q8C0D0 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms