Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Tfap2a-203ENSMUST00000223869 2037 ntBASIC18.05■□□□□ 0.48
Trim56Q80VI1 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Gm11594-201ENSMUST00000122313 162 ntBASIC18.04■□□□□ 0.48
Trim56Q80VI1 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim56Q80VI1 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Gm11839-201ENSMUST00000120647 1953 ntBASIC18.03■□□□□ 0.48
Trim56Q80VI1 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Gm5177-201ENSMUST00000183092 997 ntBASIC18.03■□□□□ 0.48
Trim56Q80VI1 Gm45747-201ENSMUST00000212203 999 ntBASIC18.03■□□□□ 0.48
Trim56Q80VI1 AC174742.1-201ENSMUST00000218272 304 ntBASIC18.03■□□□□ 0.48
Trim56Q80VI1 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim56Q80VI1 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Gm25911-201ENSMUST00000157621 56 ntBASIC18.02■□□□□ 0.48
Trim56Q80VI1 Bloc1s5-203ENSMUST00000224902 612 ntBASIC18.02■□□□□ 0.48
Trim56Q80VI1 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim56Q80VI1 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim56Q80VI1 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim56Q80VI1 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim56Q80VI1 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim56Q80VI1 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.01■□□□□ 0.47
Trim56Q80VI1 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Mir3113-201ENSMUST00000175478 76 ntBASIC18.01■□□□□ 0.47
Trim56Q80VI1 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim56Q80VI1 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.01■□□□□ 0.47
Trim56Q80VI1 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC18■□□□□ 0.47
Trim56Q80VI1 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Gm8242-201ENSMUST00000193029 1420 ntBASIC18■□□□□ 0.47
Trim56Q80VI1 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
Trim56Q80VI1 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trim56Q80VI1 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trim56Q80VI1 Gm45683-201ENSMUST00000210825 1247 ntBASIC18■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms