Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Gm15358-201ENSMUST00000119249 520 ntBASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Gm27300-201ENSMUST00000184085 97 ntBASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Gm27335-201ENSMUST00000184758 97 ntBASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Mir8117-201ENSMUST00000184773 107 ntBASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Ndufaf2-202ENSMUST00000223734 556 ntBASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.05■□□□□ 0.16
Hmgb4Q6P8W9 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Hmgb4Q6P8W9 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Gm26308-201ENSMUST00000157768 69 ntBASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 AC151286.1-201ENSMUST00000198489 145 ntBASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb4Q6P8W9 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb4Q6P8W9 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Hmgb4Q6P8W9 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb4Q6P8W9 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms