Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Six4Q61321 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Six4Q61321 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Six4Q61321 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Six4Q61321 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Six4Q61321 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 AC119177.1-201ENSMUST00000227647 1332 ntBASIC15.43■□□□□ 0.06
Six4Q61321 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Six4Q61321 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC15.43■□□□□ 0.06
Six4Q61321 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC15.43■□□□□ 0.06
Six4Q61321 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC15.43■□□□□ 0.06
Six4Q61321 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC15.43■□□□□ 0.06
Six4Q61321 AW822252-206ENSMUST00000208904 237 ntBASIC15.43■□□□□ 0.06
Six4Q61321 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC15.43■□□□□ 0.06
Six4Q61321 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Six4Q61321 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Six4Q61321 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
Six4Q61321 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Six4Q61321 Gm13597-201ENSMUST00000121239 375 ntBASIC15.42■□□□□ 0.06
Six4Q61321 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC15.42■□□□□ 0.06
Six4Q61321 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC15.42■□□□□ 0.06
Six4Q61321 Gm18246-201ENSMUST00000221023 728 ntBASIC15.42■□□□□ 0.06
Six4Q61321 Psmb5-202ENSMUST00000227257 622 ntBASIC15.42■□□□□ 0.06
Six4Q61321 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Six4Q61321 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Six4Q61321 Gm8242-201ENSMUST00000193029 1420 ntBASIC15.42■□□□□ 0.06
Six4Q61321 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Six4Q61321 Gm11873-201ENSMUST00000117877 1304 ntBASIC15.42■□□□□ 0.06
Six4Q61321 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Six4Q61321 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC15.41■□□□□ 0.06
Six4Q61321 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC15.41■□□□□ 0.06
Six4Q61321 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC15.41■□□□□ 0.06
Six4Q61321 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC15.41■□□□□ 0.06
Six4Q61321 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC15.41■□□□□ 0.06
Six4Q61321 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC15.41■□□□□ 0.06
Six4Q61321 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC15.41■□□□□ 0.06
Six4Q61321 Gm5364-201ENSMUST00000216789 889 ntBASIC15.41■□□□□ 0.06
Six4Q61321 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC15.41■□□□□ 0.06
Six4Q61321 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC15.41■□□□□ 0.06
Six4Q61321 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Six4Q61321 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Six4Q61321 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.41■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms