Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Olfr129-201ENSMUST00000122318 993 ntBASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Gm34391-201ENSMUST00000203706 907 ntBASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col28a1Q2UY11 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Mir6404-201ENSMUST00000183699 94 ntBASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col28a1Q2UY11 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 AC122351.1-201ENSMUST00000220467 126 ntBASIC14.88□□□□□ -0.03
Col28a1Q2UY11 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col28a1Q2UY11 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Efs-202ENSMUST00000227037 2540 ntBASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Col28a1Q2UY11 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 60.5 ms