Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm20553-201ENSMUST00000204205 844 ntBASIC13.21□□□□□ -0.29
Nkx3-1P97436 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC13.21□□□□□ -0.29
Nkx3-1P97436 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.21□□□□□ -0.29
Nkx3-1P97436 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Nkx3-1P97436 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Nkx3-1P97436 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Nkx3-1P97436 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Nkx3-1P97436 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Nkx3-1P97436 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Nkx3-1P97436 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Nkx3-1P97436 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Nkx3-1P97436 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC13.21□□□□□ -0.3
Nkx3-1P97436 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Nkx3-1P97436 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Mir6990-201ENSMUST00000183724 91 ntBASIC13.2□□□□□ -0.3
Nkx3-1P97436 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC13.2□□□□□ -0.3
Nkx3-1P97436 AC157650.3-201ENSMUST00000225058 1476 ntBASIC13.2□□□□□ -0.3
Nkx3-1P97436 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Gm38327-201ENSMUST00000195852 1755 ntBASIC13.2□□□□□ -0.3
Nkx3-1P97436 Prkcz2-201ENSMUST00000206136 1756 ntBASIC13.2□□□□□ -0.3
Nkx3-1P97436 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nkx3-1P97436 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Gm9385-201ENSMUST00000117563 472 ntBASIC13.19□□□□□ -0.3
Nkx3-1P97436 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 AA543401-201ENSMUST00000164248 1269 ntBASIC13.19□□□□□ -0.3
Nkx3-1P97436 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC13.19□□□□□ -0.3
Nkx3-1P97436 Gm5628-201ENSMUST00000222318 1049 ntBASIC13.19□□□□□ -0.3
Nkx3-1P97436 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Gm7669-201ENSMUST00000210184 1603 ntBASIC13.19□□□□□ -0.3
Nkx3-1P97436 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.19□□□□□ -0.3
Nkx3-1P97436 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Gm13337-201ENSMUST00000119183 1594 ntBASIC13.19□□□□□ -0.3
Nkx3-1P97436 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC13.19□□□□□ -0.3
Nkx3-1P97436 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nkx3-1P97436 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Gm43072-201ENSMUST00000200283 1671 ntBASIC13.18□□□□□ -0.3
Nkx3-1P97436 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms