Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC17.11■□□□□ 0.33
Tpm1P58771 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Tpm1P58771 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.11■□□□□ 0.33
Tpm1P58771 Gm7889-201ENSMUST00000185591 958 ntBASIC17.11■□□□□ 0.33
Tpm1P58771 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Tpm1P58771 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.11■□□□□ 0.33
Tpm1P58771 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Tpm1P58771 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC17.11■□□□□ 0.33
Tpm1P58771 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.11■□□□□ 0.33
Tpm1P58771 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Tpm1P58771 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Tpm1P58771 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
Tpm1P58771 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.1■□□□□ 0.33
Tpm1P58771 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Tpm1P58771 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
Tpm1P58771 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
Tpm1P58771 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Tpm1P58771 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Tpm1P58771 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Tpm1P58771 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Tpm1P58771 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Tpm1P58771 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Tpm1P58771 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Tpm1P58771 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Tpm1P58771 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Tpm1P58771 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.09■□□□□ 0.33
Tpm1P58771 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Tpm1P58771 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.09■□□□□ 0.33
Tpm1P58771 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC17.09■□□□□ 0.33
Tpm1P58771 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Tpm1P58771 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Tpm1P58771 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Tpm1P58771 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Tpm1P58771 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Tpm1P58771 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Tpm1P58771 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Tpm1P58771 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Tpm1P58771 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Tpm1P58771 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Tpm1P58771 Gm12134-201ENSMUST00000122109 520 ntBASIC17.08■□□□□ 0.32
Tpm1P58771 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.08■□□□□ 0.32
Tpm1P58771 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.08■□□□□ 0.32
Tpm1P58771 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Tpm1P58771 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Tpm1P58771 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Tpm1P58771 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Tpm1P58771 Gm45504-201ENSMUST00000211407 2107 ntBASIC17.08■□□□□ 0.32
Tpm1P58771 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC17.08■□□□□ 0.32
Tpm1P58771 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.08■□□□□ 0.32
Tpm1P58771 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Tpm1P58771 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC17.07■□□□□ 0.32
Tpm1P58771 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC17.07■□□□□ 0.32
Tpm1P58771 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Tpm1P58771 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.07■□□□□ 0.32
Tpm1P58771 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Tpm1P58771 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Tpm1P58771 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms