Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col18a1P39061 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col18a1P39061 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col18a1P39061 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC20.08■□□□□ 0.81
Col18a1P39061 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col18a1P39061 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col18a1P39061 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC20.08■□□□□ 0.81
Col18a1P39061 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col18a1P39061 AC139580.1-202ENSMUST00000223574 928 ntBASIC20.08■□□□□ 0.81
Col18a1P39061 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col18a1P39061 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col18a1P39061 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col18a1P39061 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col18a1P39061 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col18a1P39061 Tcf21-202ENSMUST00000218002 1788 ntBASIC20.08■□□□□ 0.81
Col18a1P39061 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC20.08■□□□□ 0.81
Col18a1P39061 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col18a1P39061 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col18a1P39061 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col18a1P39061 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC20.08■□□□□ 0.8
Col18a1P39061 Gm6244-201ENSMUST00000178732 841 ntBASIC20.08■□□□□ 0.8
Col18a1P39061 Gm2495-201ENSMUST00000191160 466 ntBASIC20.08■□□□□ 0.8
Col18a1P39061 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col18a1P39061 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col18a1P39061 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col18a1P39061 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col18a1P39061 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col18a1P39061 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 Gm8463-201ENSMUST00000208573 613 ntBASIC20.07■□□□□ 0.8
Col18a1P39061 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 AC150560.1-201ENSMUST00000227731 1187 ntBASIC20.07■□□□□ 0.8
Col18a1P39061 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC20.07■□□□□ 0.8
Col18a1P39061 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col18a1P39061 BC001981-202ENSMUST00000191393 1545 ntBASIC20.06■□□□□ 0.8
Col18a1P39061 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.06■□□□□ 0.8
Col18a1P39061 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Col18a1P39061 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col18a1P39061 Gm45841-201ENSMUST00000207700 164 ntBASIC20.06■□□□□ 0.8
Col18a1P39061 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Gm6598-201ENSMUST00000202719 2615 ntBASIC20.05■□□□□ 0.8
Col18a1P39061 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC20.05■□□□□ 0.8
Col18a1P39061 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC20.05■□□□□ 0.8
Col18a1P39061 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Gm23931-201ENSMUST00000103842 109 ntBASIC20.05■□□□□ 0.8
Col18a1P39061 Gm12585-201ENSMUST00000117307 290 ntBASIC20.05■□□□□ 0.8
Col18a1P39061 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Col18a1P39061 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Col18a1P39061 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Col18a1P39061 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Col18a1P39061 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col18a1P39061 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 Gm5279-201ENSMUST00000199575 745 ntBASIC20.04■□□□□ 0.8
Col18a1P39061 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
Col18a1P39061 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC20.04■□□□□ 0.8
Col18a1P39061 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Col18a1P39061 Celf4-206ENSMUST00000224553 1729 ntBASIC20.04■□□□□ 0.8
Col18a1P39061 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC20.04■□□□□ 0.8
Col18a1P39061 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col18a1P39061 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC20.03■□□□□ 0.8
Col18a1P39061 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms