Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Gm32996-201ENSMUST00000199828 1447 ntBASIC12.71□□□□□ -0.37
Hmgb3O54879 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
Hmgb3O54879 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC12.71□□□□□ -0.37
Hmgb3O54879 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hmgb3O54879 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hmgb3O54879 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Hmgb3O54879 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hmgb3O54879 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hmgb3O54879 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hmgb3O54879 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hmgb3O54879 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Hmgb3O54879 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hmgb3O54879 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Hmgb3O54879 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hmgb3O54879 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC12.71□□□□□ -0.37
Hmgb3O54879 Gm12527-201ENSMUST00000117967 564 ntBASIC12.71□□□□□ -0.37
Hmgb3O54879 Gm11539-201ENSMUST00000119837 557 ntBASIC12.71□□□□□ -0.37
Hmgb3O54879 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC12.71□□□□□ -0.37
Hmgb3O54879 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC12.71□□□□□ -0.37
Hmgb3O54879 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC12.71□□□□□ -0.37
Hmgb3O54879 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Hmgb3O54879 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC12.71□□□□□ -0.37
Hmgb3O54879 Gm10710-201ENSMUST00000047876 3971 ntBASIC12.71□□□□□ -0.38
Hmgb3O54879 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Hmgb3O54879 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Hmgb3O54879 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Hmgb3O54879 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC12.71□□□□□ -0.38
Hmgb3O54879 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Hmgb3O54879 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC12.71□□□□□ -0.38
Hmgb3O54879 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Hmgb3O54879 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Hmgb3O54879 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Hmgb3O54879 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
Hmgb3O54879 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 AC156016.1-201ENSMUST00000227190 1035 ntBASIC12.7□□□□□ -0.38
Hmgb3O54879 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
Hmgb3O54879 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hmgb3O54879 Efs-202ENSMUST00000227037 2540 ntBASIC12.69□□□□□ -0.38
Hmgb3O54879 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Hmgb3O54879 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Hmgb3O54879 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC12.69□□□□□ -0.38
Hmgb3O54879 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Hmgb3O54879 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Gm4217-201ENSMUST00000182243 1002 ntBASIC12.69□□□□□ -0.38
Hmgb3O54879 AC164629.5-201ENSMUST00000220387 632 ntBASIC12.69□□□□□ -0.38
Hmgb3O54879 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC12.69□□□□□ -0.38
Hmgb3O54879 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Hmgb3O54879 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC12.69□□□□□ -0.38
Hmgb3O54879 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms