Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Sybu-209ENSMUST00000228639 4113 ntBASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Gm2308-201ENSMUST00000166539 1004 ntBASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ddx56Q9D0R4 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Gm37500-201ENSMUST00000192059 1443 ntBASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Gm5049-201ENSMUST00000195878 1590 ntBASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ddx56Q9D0R4 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ddx56Q9D0R4 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC16.11■□□□□ 0.17
Ddx56Q9D0R4 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Gm43598-201ENSMUST00000202482 2479 ntBASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms