Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Gm2651-201ENSMUST00000203560 838 ntBASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Asic1-205ENSMUST00000228185 1818 ntBASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Gm18489-201ENSMUST00000172565 551 ntBASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Gm18733-201ENSMUST00000173950 856 ntBASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Gm8318-201ENSMUST00000182954 872 ntBASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf3bQ3ULL6 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Mir5126-201ENSMUST00000175513 77 ntBASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.4■□□□□ 0.22
Upf3bQ3ULL6 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Gm6184-201ENSMUST00000120403 1261 ntBASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 AC138767.1-201ENSMUST00000222661 415 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms