Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Gm11839-201ENSMUST00000120647 1953 ntBASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Gm25990-201ENSMUST00000102440 86 ntBASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Gm7556-201ENSMUST00000201178 1084 ntBASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 AC159106.1-201ENSMUST00000224421 690 ntBASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Rps4l-201ENSMUST00000071745 943 ntBASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ddx56Q9D0R4 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Gm18856-201ENSMUST00000178096 1374 ntBASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Gm7153-201ENSMUST00000117092 455 ntBASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Gm6089-201ENSMUST00000197666 938 ntBASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC16.16■□□□□ 0.18
Ddx56Q9D0R4 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Gm8318-201ENSMUST00000182954 872 ntBASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Gm6376-201ENSMUST00000209407 580 ntBASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ddx56Q9D0R4 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms