Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Vps53Q8CCB4 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Vps53Q8CCB4 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Vps53Q8CCB4 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Gm43575-201ENSMUST00000196420 516 ntBASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.89■□□□□ 0.45
Vps53Q8CCB4 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Vps53Q8CCB4 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 AC154222.1-201ENSMUST00000223882 475 ntBASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Vps53Q8CCB4 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Gm6089-201ENSMUST00000197666 938 ntBASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Vps53Q8CCB4 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Gm12497-201ENSMUST00000138778 237 ntBASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Gm6257-201ENSMUST00000163864 910 ntBASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Gm6550-201ENSMUST00000187574 993 ntBASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms