Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 AA543401-201ENSMUST00000164248 1269 ntBASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Gm6973-201ENSMUST00000117080 721 ntBASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Gm12017-201ENSMUST00000122453 1003 ntBASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Gm16026-204ENSMUST00000162652 683 ntBASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Fgf17-202ENSMUST00000227123 1336 ntBASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp40Q8BWR4 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
Usp40Q8BWR4 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Mir449b-201ENSMUST00000104833 80 ntBASIC21■□□□□ 0.95
Usp40Q8BWR4 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC21■□□□□ 0.95
Usp40Q8BWR4 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC21■□□□□ 0.95
Usp40Q8BWR4 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC21■□□□□ 0.95
Usp40Q8BWR4 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Usp40Q8BWR4 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Usp40Q8BWR4 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm22065-201ENSMUST00000103753 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm22066-201ENSMUST00000103761 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm24932-201ENSMUST00000103763 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm24115-201ENSMUST00000103799 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm22190-201ENSMUST00000103827 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm22191-201ENSMUST00000103831 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm24721-201ENSMUST00000103849 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm28018-201ENSMUST00000103869 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm26399-201ENSMUST00000103937 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm25349-201ENSMUST00000177728 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm23616-201ENSMUST00000177797 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm25871-201ENSMUST00000177816 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm24752-201ENSMUST00000178240 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm24496-201ENSMUST00000178287 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm25649-201ENSMUST00000178476 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm25548-201ENSMUST00000178681 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm23147-201ENSMUST00000178841 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm26095-201ENSMUST00000179270 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm22171-201ENSMUST00000179283 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm23936-201ENSMUST00000179354 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm22619-201ENSMUST00000179516 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm25255-201ENSMUST00000179579 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm24755-201ENSMUST00000179691 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm26506-201ENSMUST00000179692 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm25086-201ENSMUST00000179931 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm23243-201ENSMUST00000180047 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm24659-201ENSMUST00000180212 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm24169-201ENSMUST00000180244 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm23689-201ENSMUST00000180354 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm27359-201ENSMUST00000184153 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm27785-201ENSMUST00000184268 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm27466-201ENSMUST00000184396 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm27703-201ENSMUST00000184836 110 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 AC166341.4-201ENSMUST00000220625 123 ntBASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp40Q8BWR4 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms