Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.88■□□□□ 0.77
Trim28Q62318 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC19.87■□□□□ 0.77
Trim28Q62318 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Trim28Q62318 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Gm25287-201ENSMUST00000103846 110 ntBASIC19.87■□□□□ 0.77
Trim28Q62318 Gm22918-201ENSMUST00000103855 110 ntBASIC19.87■□□□□ 0.77
Trim28Q62318 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC19.87■□□□□ 0.77
Trim28Q62318 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC19.87■□□□□ 0.77
Trim28Q62318 Gm15483-201ENSMUST00000120338 456 ntBASIC19.87■□□□□ 0.77
Trim28Q62318 Gm12017-201ENSMUST00000122453 1003 ntBASIC19.87■□□□□ 0.77
Trim28Q62318 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC19.87■□□□□ 0.77
Trim28Q62318 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC19.87■□□□□ 0.77
Trim28Q62318 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC19.87■□□□□ 0.77
Trim28Q62318 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Trim28Q62318 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Gm8096-201ENSMUST00000209921 1591 ntBASIC19.87■□□□□ 0.77
Trim28Q62318 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim28Q62318 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Trim28Q62318 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Trim28Q62318 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Gm13616-201ENSMUST00000120600 222 ntBASIC19.86■□□□□ 0.77
Trim28Q62318 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
Trim28Q62318 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC19.86■□□□□ 0.77
Trim28Q62318 Auts2-212ENSMUST00000178555 309 ntBASIC19.86■□□□□ 0.77
Trim28Q62318 Gm8597-201ENSMUST00000191525 1109 ntBASIC19.86■□□□□ 0.77
Trim28Q62318 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC19.86■□□□□ 0.77
Trim28Q62318 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.86■□□□□ 0.77
Trim28Q62318 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Trim28Q62318 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim28Q62318 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Trim28Q62318 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
Trim28Q62318 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC19.85■□□□□ 0.77
Trim28Q62318 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC19.85■□□□□ 0.77
Trim28Q62318 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC19.85■□□□□ 0.77
Trim28Q62318 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC19.85■□□□□ 0.77
Trim28Q62318 AC139382.1-201ENSMUST00000221402 498 ntBASIC19.85■□□□□ 0.77
Trim28Q62318 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
Trim28Q62318 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC19.85■□□□□ 0.77
Trim28Q62318 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Trim28Q62318 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim28Q62318 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 AC131743.5-201ENSMUST00000220775 1618 ntBASIC19.84■□□□□ 0.77
Trim28Q62318 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Trim28Q62318 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Trim28Q62318 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
Trim28Q62318 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
Trim28Q62318 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC19.84■□□□□ 0.77
Trim28Q62318 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC19.84■□□□□ 0.77
Trim28Q62318 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Trim28Q62318 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC19.84■□□□□ 0.77
Trim28Q62318 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC19.84■□□□□ 0.77
Trim28Q62318 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim28Q62318 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Trim28Q62318 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms