Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Mir770-201ENSMUST00000103252 94 ntBASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Wnt10b-206ENSMUST00000228546 2709 ntBASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col28a1Q2UY11 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Spr-ps1-201ENSMUST00000089584 605 ntBASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC14.96□□□□□ -0.01
Col28a1Q2UY11 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col28a1Q2UY11 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col28a1Q2UY11 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Col28a1Q2UY11 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col28a1Q2UY11 Gm5357-201ENSMUST00000212720 1924 ntBASIC14.96□□□□□ -0.02
Col28a1Q2UY11 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col28a1Q2UY11 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Gm8784-201ENSMUST00000222096 1435 ntBASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Gm37722-201ENSMUST00000193757 208 ntBASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Mzt1-203ENSMUST00000227948 952 ntBASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col28a1Q2UY11 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms