Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Gm13223-201ENSMUST00000118609 747 ntBASIC13.11□□□□□ -0.31
Col8a1Q00780 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Gm24158-201ENSMUST00000175263 71 ntBASIC13.11□□□□□ -0.31
Col8a1Q00780 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col8a1Q00780 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Col8a1Q00780 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC13.11□□□□□ -0.31
Col8a1Q00780 AC122024.2-201ENSMUST00000220086 871 ntBASIC13.11□□□□□ -0.31
Col8a1Q00780 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Col8a1Q00780 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Nudt18-203ENSMUST00000228768 1578 ntBASIC13.11□□□□□ -0.31
Col8a1Q00780 Gm37166-201ENSMUST00000195473 2474 ntBASIC13.11□□□□□ -0.31
Col8a1Q00780 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col8a1Q00780 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC13.1□□□□□ -0.31
Col8a1Q00780 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC13.1□□□□□ -0.31
Col8a1Q00780 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC13.1□□□□□ -0.31
Col8a1Q00780 Gm7336-201ENSMUST00000107041 1232 ntBASIC13.1□□□□□ -0.31
Col8a1Q00780 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Col8a1Q00780 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC13.1□□□□□ -0.31
Col8a1Q00780 Rpph1-201ENSMUST00000175096 319 ntBASIC13.1□□□□□ -0.31
Col8a1Q00780 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC13.1□□□□□ -0.31
Col8a1Q00780 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Col8a1Q00780 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Col8a1Q00780 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Gm42918-201ENSMUST00000199249 1580 ntBASIC13.1□□□□□ -0.31
Col8a1Q00780 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col8a1Q00780 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Col8a1Q00780 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC13.09□□□□□ -0.31
Col8a1Q00780 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Col8a1Q00780 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC13.09□□□□□ -0.31
Col8a1Q00780 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Gm38294-201ENSMUST00000192831 381 ntBASIC13.09□□□□□ -0.31
Col8a1Q00780 Gm7653-201ENSMUST00000214567 508 ntBASIC13.09□□□□□ -0.31
Col8a1Q00780 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Col8a1Q00780 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC13.09□□□□□ -0.31
Col8a1Q00780 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
Col8a1Q00780 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC13.09□□□□□ -0.31
Col8a1Q00780 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Col8a1Q00780 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col8a1Q00780 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
Col8a1Q00780 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
Col8a1Q00780 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col8a1Q00780 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.31
Col8a1Q00780 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col8a1Q00780 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col8a1Q00780 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col8a1Q00780 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col8a1Q00780 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col8a1Q00780 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col8a1Q00780 Gm22065-201ENSMUST00000103753 110 ntBASIC13.08□□□□□ -0.32
Col8a1Q00780 Gm22066-201ENSMUST00000103761 110 ntBASIC13.08□□□□□ -0.32
Col8a1Q00780 Gm24932-201ENSMUST00000103763 110 ntBASIC13.08□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms