Protein–RNA interactions for Protein: P22518

Clk1, Dual specificity protein kinase CLK1, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk1P22518 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.35□□□□□ -0.11
Clk1P22518 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.35□□□□□ -0.11
Clk1P22518 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Clk1P22518 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Clk1P22518 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC14.34□□□□□ -0.11
Clk1P22518 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.34□□□□□ -0.11
Clk1P22518 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Gm38327-201ENSMUST00000195852 1755 ntBASIC14.34□□□□□ -0.11
Clk1P22518 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Gm43061-201ENSMUST00000198850 2241 ntBASIC14.34□□□□□ -0.11
Clk1P22518 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Clk1P22518 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Clk1P22518 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Clk1P22518 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.33□□□□□ -0.12
Clk1P22518 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Clk1P22518 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.33□□□□□ -0.12
Clk1P22518 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.33□□□□□ -0.12
Clk1P22518 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.33□□□□□ -0.12
Clk1P22518 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Clk1P22518 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14.33□□□□□ -0.12
Clk1P22518 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.33□□□□□ -0.12
Clk1P22518 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Clk1P22518 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
Clk1P22518 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.32□□□□□ -0.12
Clk1P22518 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Clk1P22518 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC14.32□□□□□ -0.12
Clk1P22518 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Clk1P22518 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.32□□□□□ -0.12
Clk1P22518 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Clk1P22518 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.32□□□□□ -0.12
Clk1P22518 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.32□□□□□ -0.12
Clk1P22518 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Clk1P22518 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Clk1P22518 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk1P22518 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms