Protein–RNA interactions for Protein: P10628

Hoxd4, Homeobox protein Hox-D4, mousemouse

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd4P10628 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Hoxd4P10628 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
Hoxd4P10628 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC13.81□□□□□ -0.2
Hoxd4P10628 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC13.81□□□□□ -0.2
Hoxd4P10628 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd4P10628 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd4P10628 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd4P10628 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd4P10628 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Hoxd4P10628 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd4P10628 AC122901.1-201ENSMUST00000214203 1790 ntBASIC13.81□□□□□ -0.2
Hoxd4P10628 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd4P10628 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd4P10628 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Hoxd4P10628 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Hoxd4P10628 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
Hoxd4P10628 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Hoxd4P10628 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC13.8□□□□□ -0.2
Hoxd4P10628 Gm43799-201ENSMUST00000201845 579 ntBASIC13.8□□□□□ -0.2
Hoxd4P10628 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Hoxd4P10628 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Hoxd4P10628 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Hoxd4P10628 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Hoxd4P10628 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Gm44443-201ENSMUST00000204396 5633 ntBASIC13.8□□□□□ -0.2
Hoxd4P10628 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 AC154855.1-201ENSMUST00000227353 1458 ntBASIC13.8□□□□□ -0.2
Hoxd4P10628 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd4P10628 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Hoxd4P10628 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Gm13186-201ENSMUST00000118031 316 ntBASIC13.79□□□□□ -0.2
Hoxd4P10628 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC13.79□□□□□ -0.2
Hoxd4P10628 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Hoxd4P10628 Gm21814-202ENSMUST00000203277 873 ntBASIC13.79□□□□□ -0.2
Hoxd4P10628 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Hoxd4P10628 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC13.79□□□□□ -0.2
Hoxd4P10628 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC13.79□□□□□ -0.2
Hoxd4P10628 AC156016.1-201ENSMUST00000227190 1035 ntBASIC13.79□□□□□ -0.2
Hoxd4P10628 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Gm8784-201ENSMUST00000222096 1435 ntBASIC13.79□□□□□ -0.2
Hoxd4P10628 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.79□□□□□ -0.2
Hoxd4P10628 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Hoxd4P10628 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd4P10628 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC13.78□□□□□ -0.2
Hoxd4P10628 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
Hoxd4P10628 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC13.78□□□□□ -0.2
Hoxd4P10628 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Hoxd4P10628 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Gm30025-201ENSMUST00000218555 728 ntBASIC13.78□□□□□ -0.2
Hoxd4P10628 Timm23-208ENSMUST00000226683 750 ntBASIC13.78□□□□□ -0.2
Hoxd4P10628 Odf3b-204ENSMUST00000227834 930 ntBASIC13.78□□□□□ -0.2
Hoxd4P10628 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd4P10628 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms