Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm9013-201ENSMUST00000132939 882 ntBASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm38058-201ENSMUST00000194323 4368 ntBASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav6-1A0A075B5Z8 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm18032-201ENSMUST00000222541 538 ntBASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav6-1A0A075B5Z8 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm10676-201ENSMUST00000098778 3221 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm4609-201ENSMUST00000106443 1002 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm5138-201ENSMUST00000113842 1002 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm15191-201ENSMUST00000117933 1000 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm12182-201ENSMUST00000118655 1008 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm13312-201ENSMUST00000119631 718 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm13882-201ENSMUST00000120886 1002 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm10284-201ENSMUST00000145057 1005 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm6623-201ENSMUST00000173570 544 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm10481-201ENSMUST00000179228 1002 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm2574-201ENSMUST00000181051 1002 ntBASIC12.35□□□□□ -0.43
Trav6-1A0A075B5Z8 Gm3200-201ENSMUST00000181493 1002 ntBASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms