Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 AC154532.1-201ENSMUST00000227860 965 ntBASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Prpf40aQ9R1C7 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Prpf40aQ9R1C7 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Prpf40aQ9R1C7 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Prpf40aQ9R1C7 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Prpf40aQ9R1C7 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Gm8097-201ENSMUST00000117903 829 ntBASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 AC153937.1-201ENSMUST00000218734 412 ntBASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Gm18622-201ENSMUST00000219361 595 ntBASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prpf40aQ9R1C7 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prpf40aQ9R1C7 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prpf40aQ9R1C7 AC117588.1-201ENSMUST00000228510 999 ntBASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms