Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Gm11453-201ENSMUST00000117318 1007 ntBASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim54Q9ERP3 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Trim54Q9ERP3 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Trim54Q9ERP3 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 AC155252.2-201ENSMUST00000226946 680 ntBASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim54Q9ERP3 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim54Q9ERP3 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms