Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Gm13418-201ENSMUST00000119097 944 ntBASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Umpk-ps-201ENSMUST00000211897 827 ntBASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ddx56Q9D0R4 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Ddx56Q9D0R4 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Ddx56Q9D0R4 BC037039-201ENSMUST00000192003 2205 ntBASIC16.21■□□□□ 0.18
Ddx56Q9D0R4 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Ddx56Q9D0R4 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 AC154757.1-201ENSMUST00000228289 336 ntBASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ddx56Q9D0R4 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.19■□□□□ 0.18
Ddx56Q9D0R4 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Ddx56Q9D0R4 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms