Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc9Q8VC31 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc9Q8VC31 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Gm43509-201ENSMUST00000196551 2594 ntBASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc9Q8VC31 Gm13158-201ENSMUST00000122007 736 ntBASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc9Q8VC31 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Gm12527-201ENSMUST00000117967 564 ntBASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Mir2861-201ENSMUST00000175539 82 ntBASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Ccdc9Q8VC31 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms