Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Gm23935-201ENSMUST00000102303 57 ntBASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Gm24270-201ENSMUST00000102326 57 ntBASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Gm12497-201ENSMUST00000138778 237 ntBASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Gm24245-201ENSMUST00000157318 57 ntBASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ushbp1Q8R370 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Ushbp1Q8R370 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ushbp1Q8R370 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ushbp1Q8R370 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ushbp1Q8R370 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC17.27■□□□□ 0.35
Ushbp1Q8R370 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ushbp1Q8R370 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ushbp1Q8R370 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ushbp1Q8R370 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Gm4459-201ENSMUST00000118750 468 ntBASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Gm14494-201ENSMUST00000118786 435 ntBASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Gm18622-201ENSMUST00000219361 595 ntBASIC17.26■□□□□ 0.35
Ushbp1Q8R370 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Ushbp1Q8R370 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Gm2756-201ENSMUST00000195851 400 ntBASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ushbp1Q8R370 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Gm4995-201ENSMUST00000117247 432 ntBASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms