Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim27Q62158 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC18.92■□□□□ 0.62
Trim27Q62158 Mir8098-201ENSMUST00000184011 137 ntBASIC18.92■□□□□ 0.62
Trim27Q62158 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim27Q62158 AC161829.1-201ENSMUST00000220298 281 ntBASIC18.92■□□□□ 0.62
Trim27Q62158 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC18.92■□□□□ 0.62
Trim27Q62158 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim27Q62158 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim27Q62158 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim27Q62158 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim27Q62158 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim27Q62158 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim27Q62158 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Trim27Q62158 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim27Q62158 Gm13034-201ENSMUST00000121342 3177 ntBASIC18.91■□□□□ 0.62
Trim27Q62158 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trim27Q62158 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Trim27Q62158 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.91■□□□□ 0.62
Trim27Q62158 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC18.91■□□□□ 0.62
Trim27Q62158 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
Trim27Q62158 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trim27Q62158 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Trim27Q62158 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim27Q62158 AC157650.3-201ENSMUST00000225058 1476 ntBASIC18.9■□□□□ 0.62
Trim27Q62158 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Trim27Q62158 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Gm7901-201ENSMUST00000120430 1597 ntBASIC18.9■□□□□ 0.62
Trim27Q62158 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim27Q62158 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC18.9■□□□□ 0.62
Trim27Q62158 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC18.9■□□□□ 0.62
Trim27Q62158 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Gm6550-201ENSMUST00000187574 993 ntBASIC18.9■□□□□ 0.62
Trim27Q62158 Gm37153-201ENSMUST00000193637 231 ntBASIC18.9■□□□□ 0.62
Trim27Q62158 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim27Q62158 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Trim27Q62158 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
Trim27Q62158 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim27Q62158 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim27Q62158 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Trim27Q62158 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
Trim27Q62158 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Gm7222-201ENSMUST00000117512 906 ntBASIC18.89■□□□□ 0.61
Trim27Q62158 Gm18489-201ENSMUST00000172565 551 ntBASIC18.89■□□□□ 0.61
Trim27Q62158 Gm10499-201ENSMUST00000174094 934 ntBASIC18.89■□□□□ 0.61
Trim27Q62158 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC18.89■□□□□ 0.61
Trim27Q62158 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Trim27Q62158 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim27Q62158 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Trim27Q62158 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim27Q62158 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim27Q62158 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Trim27Q62158 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim27Q62158 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim27Q62158 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim27Q62158 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim27Q62158 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim27Q62158 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim27Q62158 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC18.88■□□□□ 0.61
Trim27Q62158 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC18.88■□□□□ 0.61
Trim27Q62158 Gm5253-201ENSMUST00000187104 1025 ntBASIC18.88■□□□□ 0.61
Trim27Q62158 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC18.88■□□□□ 0.61
Trim27Q62158 Gm9682-201ENSMUST00000197505 556 ntBASIC18.88■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms