Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC15.28■□□□□ 0.04
Shox2P70390 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC15.28■□□□□ 0.04
Shox2P70390 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Shox2P70390 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Shox2P70390 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Gm42471-201ENSMUST00000201457 1865 ntBASIC15.28■□□□□ 0.04
Shox2P70390 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shox2P70390 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shox2P70390 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shox2P70390 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shox2P70390 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shox2P70390 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shox2P70390 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shox2P70390 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC15.27■□□□□ 0.04
Shox2P70390 Gm20049-201ENSMUST00000219950 730 ntBASIC15.27■□□□□ 0.04
Shox2P70390 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC15.27■□□□□ 0.04
Shox2P70390 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Shox2P70390 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Shox2P70390 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Shox2P70390 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 AC166491.1-201ENSMUST00000227053 2308 ntBASIC15.26■□□□□ 0.03
Shox2P70390 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Shox2P70390 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC15.26■□□□□ 0.03
Shox2P70390 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Gm4217-201ENSMUST00000182243 1002 ntBASIC15.26■□□□□ 0.03
Shox2P70390 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Gm7370-201ENSMUST00000219471 767 ntBASIC15.26■□□□□ 0.03
Shox2P70390 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Shox2P70390 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Shox2P70390 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Shox2P70390 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Gm44645-201ENSMUST00000205492 1653 ntBASIC15.25■□□□□ 0.03
Shox2P70390 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
Shox2P70390 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC15.25■□□□□ 0.03
Shox2P70390 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Shox2P70390 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Shox2P70390 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC15.25■□□□□ 0.03
Shox2P70390 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shox2P70390 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC15.25■□□□□ 0.03
Shox2P70390 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Shox2P70390 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Shox2P70390 Gm26513-201ENSMUST00000181802 2489 ntBASIC15.24■□□□□ 0.03
Shox2P70390 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shox2P70390 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Shox2P70390 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shox2P70390 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shox2P70390 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
Shox2P70390 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shox2P70390 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Shox2P70390 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC15.24■□□□□ 0.03
Shox2P70390 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC15.24■□□□□ 0.03
Shox2P70390 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Shox2P70390 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC15.24■□□□□ 0.03
Shox2P70390 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shox2P70390 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms