Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sox1P53783 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC15.7■□□□□ 0.1
Sox1P53783 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sox1P53783 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC15.7■□□□□ 0.1
Sox1P53783 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Sox1P53783 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sox1P53783 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Gm11918-201ENSMUST00000121660 179 ntBASIC15.69■□□□□ 0.1
Sox1P53783 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC15.69■□□□□ 0.1
Sox1P53783 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC15.69■□□□□ 0.1
Sox1P53783 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC15.69■□□□□ 0.1
Sox1P53783 AC238811.1-201ENSMUST00000225302 441 ntBASIC15.69■□□□□ 0.1
Sox1P53783 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Gm15823-201ENSMUST00000064305 670 ntBASIC15.69■□□□□ 0.1
Sox1P53783 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Sox1P53783 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Sox1P53783 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox1P53783 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
Sox1P53783 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Sox1P53783 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Sox1P53783 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Sox1P53783 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Sox1P53783 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Asic1-205ENSMUST00000228185 1818 ntBASIC15.68■□□□□ 0.1
Sox1P53783 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox1P53783 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Sox1P53783 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Sox1P53783 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Sox1P53783 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Sox1P53783 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC15.67■□□□□ 0.1
Sox1P53783 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Sox1P53783 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Sox1P53783 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Sox1P53783 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
Sox1P53783 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Sox1P53783 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Sox1P53783 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Gm45841-201ENSMUST00000207700 164 ntBASIC15.67■□□□□ 0.1
Sox1P53783 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Sox1P53783 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Sox1P53783 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Sox1P53783 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Gm22189-201ENSMUST00000103822 86 ntBASIC15.66■□□□□ 0.1
Sox1P53783 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Mir1982-201ENSMUST00000157368 74 ntBASIC15.66■□□□□ 0.1
Sox1P53783 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC15.66■□□□□ 0.1
Sox1P53783 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Sox1P53783 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Sox1P53783 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.66■□□□□ 0.1
Sox1P53783 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox1P53783 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms