Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1i3O35627 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1i3O35627 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1i3O35627 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1i3O35627 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Nr1i3O35627 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
Nr1i3O35627 Gm33142-201ENSMUST00000193913 867 ntBASIC16.58■□□□□ 0.24
Nr1i3O35627 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC16.58■□□□□ 0.24
Nr1i3O35627 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.58■□□□□ 0.24
Nr1i3O35627 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Nr1i3O35627 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Nr1i3O35627 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Nr1i3O35627 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.57■□□□□ 0.24
Nr1i3O35627 Gm7284-201ENSMUST00000131667 944 ntBASIC16.57■□□□□ 0.24
Nr1i3O35627 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC16.57■□□□□ 0.24
Nr1i3O35627 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.57■□□□□ 0.24
Nr1i3O35627 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.57■□□□□ 0.24
Nr1i3O35627 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Nr1i3O35627 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Nr1i3O35627 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Nr1i3O35627 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Nr1i3O35627 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Nr1i3O35627 AC093926.2-201ENSMUST00000214468 1228 ntBASIC16.56■□□□□ 0.24
Nr1i3O35627 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.56■□□□□ 0.24
Nr1i3O35627 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
Nr1i3O35627 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Nr1i3O35627 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.56■□□□□ 0.24
Nr1i3O35627 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Nr1i3O35627 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Nr1i3O35627 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
Nr1i3O35627 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC16.55■□□□□ 0.24
Nr1i3O35627 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC16.55■□□□□ 0.24
Nr1i3O35627 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Nr1i3O35627 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
Nr1i3O35627 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Gm12895-201ENSMUST00000122214 226 ntBASIC16.55■□□□□ 0.24
Nr1i3O35627 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.55■□□□□ 0.24
Nr1i3O35627 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Nr1i3O35627 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Nr1i3O35627 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms