Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Gm6415-201ENSMUST00000118488 348 ntBASIC16.25■□□□□ 0.19
Clp1Q99LI9 Gm12151-201ENSMUST00000121374 290 ntBASIC16.25■□□□□ 0.19
Clp1Q99LI9 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC16.25■□□□□ 0.19
Clp1Q99LI9 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Gm5866-201ENSMUST00000177881 973 ntBASIC16.25■□□□□ 0.19
Clp1Q99LI9 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Clp1Q99LI9 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Gm16026-204ENSMUST00000162652 683 ntBASIC16.24■□□□□ 0.19
Clp1Q99LI9 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Clp1Q99LI9 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC16.23■□□□□ 0.19
Clp1Q99LI9 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Clp1Q99LI9 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC16.23■□□□□ 0.19
Clp1Q99LI9 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Clp1Q99LI9 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC16.22■□□□□ 0.19
Clp1Q99LI9 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Gm11543-201ENSMUST00000120758 370 ntBASIC16.22■□□□□ 0.19
Clp1Q99LI9 Gm9824-201ENSMUST00000178707 561 ntBASIC16.22■□□□□ 0.19
Clp1Q99LI9 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC16.22■□□□□ 0.19
Clp1Q99LI9 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Clp1Q99LI9 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Clp1Q99LI9 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC16.21■□□□□ 0.19
Clp1Q99LI9 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Clp1Q99LI9 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms